I'm pretty nitpicky about details. I do not see major FUBAR's like this with Fender products, but some small issues, like sharp fret ends, or nut slot depth issues do surface and it's my job to remedy them.
I'm really picky about intonation, but I discovered that on brand new guitars, the intonation is generally spot-on with no need to "temper" or "average" the values between the 12th and 3rd frets. Set it at the 12th and it's dead on the money everywhere.
We recently QC'd some Squire Classic Vibe 50's Stratocasters made in Indonesia and they are some of the best overall quality that I've seen on guitars costing 2 times as much.